CDS

Accession Number TCMCG010C29880
gbkey CDS
Protein Id XP_016540395.1
Location join(6792747..6792782,6792861..6792905,6793253..6793312,6794202..6794262,6794350..6794462,6794650..6795096,6795252..6795387,6795648..6795715,6795916..6796053)
Gene LOC107840952
GeneID 107840952
Organism Capsicum annuum

Protein

Length 367aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA319678
db_source XM_016684909.1
Definition PREDICTED: splicing factor U2af large subunit B-like isoform X3 [Capsicum annuum]

EGGNOG-MAPPER Annotation

COG_category A
Description Splicing factor U2af large subunit
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12837        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000243        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003727        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008187        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0030628        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036002        [VIEW IN EMBL-EBI]
GO:0042742        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0089701        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTTCCTAACATGTTCCCTTTGACATCTGGACCGCTTGGAGCACTTCCTGTTATGCCAGTTCAGGCAATGACTCAGCAGGCGACTAGACATGCAAGACGAGTTTACGTTGGTGGACTTCCTCCTACTGCAAATGAACAGTCGGTGGCTACATACTTCAATCATGTTATGTCGGCAATTGGTGGAAACACCGCCGGTCCAGGAGATGCTGTCGTTAATGTTTATATAAACCATGAGAAAAAGTTTGCTTTCGTTGAGATGAGATCCGTGGAGGAGGCCAGCAATGCCATGGCCTTAGATGGCATTATCTTTGAGGGAACACAAGTTAAGGTCAGAAGACCGACCGACTATAACCCGTCTCTGGCTGCAACTCTTGGTCCGAGCCAACCAAATCCAAACCTTAACCTTGCTGCAGTGGGACTATCACCAGGATCCACTGGTGGGCTTGAAGGTCCTGACCGAATTTTTGTGGGAGGCCTGCCATATTATTTCACTGAAGCTCAGATTAGGGAGTTGCTGGAGTCCTTTGGTCCTCTTCGGGGTTTTAATCTTGTTAAAGATAAAGAAACTGGAAACTCGAAAGGCTATGCATTTTGTGTGTACGCTGATGTGTCAGTAACAGATATTGCCTGTGCAGCTCTTAATGGGATTAAGATGGGTGATAAAACTCTTACTGTCAGACGTGCTAGTCAAGGTACTTTACAGCCTAAGCCAGAGCAGGAGATTGTATTAATGCATGCTCAGCAACAAATAGCACTGCAGAGGCTCATGCTCCAACCTGGTGGACCTCCTACAAAAGTCTTATGCCTAACAAATGTCGTTAGCCCGGATGAGCTCAAAGATGATGAAGACTATGAAGATATAATGGAAGATATGAGAATGGAATGTGGGAAGTTTGGTAATTTAGTGAATTTAGTCATCCCGCGCCCAAGGCTTGATGGTGAACCTACACCAGGGGTTGGAAAGGTCTATTTGGAGTATGAAGATGTGGAGAGTTCTTCAAGAGCTCAACAAGGGTTGAATGGCAGAAAATTCGGAGGAAACCAAGTTGTTGCTGTCTTTTATCCAGAGAACAAGTTCGCCGAGGGGGACTACGAGGGCTAG
Protein:  
MLPNMFPLTSGPLGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATYFNHVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTQVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLSPGSTGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFNLVKDKETGNSKGYAFCVYADVSVTDIACAALNGIKMGDKTLTVRRASQGTLQPKPEQEIVLMHAQQQIALQRLMLQPGGPPTKVLCLTNVVSPDELKDDEDYEDIMEDMRMECGKFGNLVNLVIPRPRLDGEPTPGVGKVYLEYEDVESSSRAQQGLNGRKFGGNQVVAVFYPENKFAEGDYEG